STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC4155Unnamed protein product (197 aa)    
Predicted Functional Partners:
aphB
Phytochrome-like protein; Bacteriophytochrome (light-regulated signal transduction histidine kinase)
 
  
 0.952
tetA
Tetracycline-efflux transporter; Permeases of the major facilitator superfamily
 
     0.641
XCC4179
annotation not available
  
     0.633
XCC0571
Uncharacterized protein
  
     0.525
mutM1
Endonuclease; Formamidopyrimidine-DNA glycosylase
  
     0.465
gumF
GumF protein; Fucose 4-O-acetylase and related acetyltransferases
  
     0.439
gumL
GumL protein; Pyruvylation of the outer mannose of xanthan
  
     0.405
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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