STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slyATranscriptional regulator for cryptic hemolysin; Transcriptional regulators (147 aa)    
Predicted Functional Partners:
XCC4171
Predicted membrane protein
 
 
   0.955
XCC4168
annotation not available
 
     0.928
fusE
Fusaric acid resistance protein; Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
 
 
 
 0.919
oprN6
Outer membrane protein
 
     0.845
folE
GTP cyclohydrolase 1; Unnamed protein product
       0.593
uriC
Uncharacterized protein conserved in bacteria
      
 0.589
sco
Uncharacterized protein SCO1/SenC/PrrC,involved in biogenesis of respiratory and photosynthetic systems
      
 0.587
XCC4164
annotation not available
       0.562
XCC4165
annotation not available
       0.562
rpoH
DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)
      
 0.503
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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