STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oprN6Outer membrane protein (483 aa)    
Predicted Functional Partners:
fusE
Fusaric acid resistance protein; Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
 
 
 0.968
XCC4168
annotation not available
 
     0.953
XCC4171
Predicted membrane protein
 
   
 0.946
slyA
Transcriptional regulator for cryptic hemolysin; Transcriptional regulators
 
     0.845
mexB
Cation/multidrug efflux pump
 
 0.663
XCC1439
Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
 
 
 0.650
mexA
Multidrug resistance protein; Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
 
 0.647
mexF
Cation/multidrug efflux pump
 
 0.633
tptC
ABC transporter ATP-binding protein; ABC-type antimicrobial peptide transport system, ATPase component
  
 
 0.625
acrA2
Multidrug resistance protein; Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
 
 
 0.622
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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