STRINGSTRING
oprN6 protein (Xanthomonas campestris campestris) - STRING interaction network
"oprN6" - Outer membrane protein in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oprN6Outer membrane protein (483 aa)    
Predicted Functional Partners:
fusE
Fusaric acid resistance protein; Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (311 aa)
 
 
  0.968
XCC4168
annotation not available (89 aa)
 
          0.953
XCC4171
Predicted membrane protein (766 aa)
 
     
  0.946
slyA
Transcriptional regulator for cryptic hemolysin; Transcriptional regulators (147 aa)
 
          0.845
mexB
Cation/multidrug efflux pump (1044 aa)
 
  0.663
XCC1439
Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (396 aa)
 
 
  0.650
mexA
Multidrug resistance protein; Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (399 aa)
 
  0.647
mexF
Cation/multidrug efflux pump (1075 aa)
 
  0.633
tptC
ABC transporter ATP-binding protein; ABC-type antimicrobial peptide transport system, ATPase component (229 aa)
   
 
  0.625
acrA2
Multidrug resistance protein; Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family (436 aa)
 
 
  0.622
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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