STRINGSTRING
vacJ protein (Xanthomonas campestris campestris) - STRING interaction network
"vacJ" - Surface lipoprotein in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vacJSurface lipoprotein (354 aa)    
Predicted Functional Partners:
yrbC
Toluene tolerance protein; ABC-type transport system involved in resistance to organic solvents auxiliary component (221 aa)
 
 
  0.993
yrbD
Toluene tolerance protein; ABC-type transport system involved in resistance to organic solvents periplasmic component (180 aa)
 
     
  0.979
XCC4211
Predicted NTP binding protein (contains STAS domain) (97 aa)
 
     
  0.920
XCC4208
Toluene tolerance protein; ABC-type transport system involved in resistance to organic solvents permease component (249 aa)
 
     
  0.890
XCC4207
Toluene tolerance protein; ABC-type spermidine/putrescine transport systems, ATPase components (264 aa)
 
 
 
  0.882
XCC1659
C-type cytochrome biogenesis membrane protein; Cytochrome c biogenesis factor (665 aa)
         
  0.636
XCC2224
C-type cytochrome biogenesis membrane protein; Cytochrome c biogenesis factor (645 aa)
         
  0.636
ccmD
Heme exporter protein D; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes (67 aa)
         
  0.630
XCC1054
Aminopeptidase; Unnamed protein product (890 aa)
           
  0.609
pepN
Aminopeptidase N (891 aa)
           
  0.609
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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