STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC4229annotation not available (623 aa)    
Predicted Functional Partners:
hrpW
annotation not available
  
   
 0.821
XCC1543
Uncharacterized protein; Cyclopropane fatty acid synthase and related methyltransferases
  
     0.763
pel1
Pectate lyase
  
     0.658
XCC3409
Nisin-resistance protein; Periplasmic protease
  
     0.644
pme2
Pectinesterase; Pectin methylesterase
  
     0.591
hopD
Uncharacterized protein AvrBs1.1; Protein tyrosine phosphatase
      
 0.589
XCC2565
Leucine-rich repeat (LRR) protein
      
 0.581
XCC4048
annotation not available
  
     0.514
CAP52470.1
annotation not available
  
     0.513
yadF
Carbonic anhydrase; Reversible hydration of carbon dioxide
    
 
 0.507
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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