STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmHRibosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family (46 aa)    
Predicted Functional Partners:
rpsU
Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family
   
 
 0.989
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA
  
 
 0.988
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme
  
  
 0.988
rpsI
Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family
  
 
 0.981
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20
  
 
 0.979
rpmG
Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family
   
 
 0.975
rplQ
Ribosomal protein L17
   
 
 0.974
rpsP
Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family
   
 
 0.973
rpmF
annotation not available
   
 
 0.971
rpmI
Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family
  
 
 0.967
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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