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rpmH protein (Xanthomonas campestris campestris) - STRING interaction network
"rpmH" - Ribosomal protein L34 in Xanthomonas campestris campestris
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmHRibosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family (46 aa)    
Predicted Functional Partners:
rpsU
Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family (71 aa)
     
 
  0.989
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5’-leader sequence from pre-tRNA to produce the mature 5’-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5’-leader sequence and broadening the substrate specificity of the ribozyme (148 aa)
   
   
  0.988
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA (89 aa)
   
 
  0.988
rpsI
Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family (130 aa)
   
 
  0.981
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20 (106 aa)
   
 
  0.979
rpmG
Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family (55 aa)
     
 
  0.975
rplQ
Ribosomal protein L17 (127 aa)
     
 
  0.974
rpsP
Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family (86 aa)
     
 
  0.973
rpmF
annotation not available (64 aa)
     
 
  0.971
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (119 aa)
   
 
  0.967
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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