STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABY93772.1SMART: AAA ATPase. (327 aa)    
Predicted Functional Partners:
ABY93773.1
TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region.
 
  
 0.963
ABY95889.1
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
 
 0.766
ABY93762.1
Hypothetical protein.
  
 
 0.735
ABY95172.1
Hypothetical protein.
  
     0.727
ABY95365.1
PFAM: HhH-GPD family protein; 8-oxoguanine DNA glycosylase domain protein.
  
     0.572
ABY93774.1
Peptidase M23B; PFAM: Peptidoglycan-binding LysM; peptidase M23B; G5 domain protein.
       0.571
ABY94676.1
PFAM: Radical SAM domain protein.
  
     0.504
ABY95155.1
PFAM: single-strand binding protein/Primosomal replication protein n.
 
   
 0.502
ABY94125.1
PFAM: YbbR family protein.
 
     0.488
ABY94420.1
Hypothetical protein.
  
     0.481
Your Current Organism:
Thermoanaerobacter pseudethanolicus
NCBI taxonomy Id: 340099
Other names: Clostridium thermohydrosulfuricum 39E, T. pseudethanolicus ATCC 33223, Thermoanaerobacter ethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus 39E, Thermoanaerobacter pseudethanolicus ATCC 33223, Thermoanaerobacter pseudethanolicus str. ATCC 33223, Thermoanaerobacter pseudethanolicus strain ATCC 33223
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