STRINGSTRING
scoB protein (Bordetella petrii) - STRING interaction network
"scoB" - 3-oxoacid CoA-transferase subunit B in Bordetella petrii
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scoB3-oxoacid CoA-transferase subunit B (212 aa)    
Predicted Functional Partners:
scoA
3-oxoacid CoA-transferase subunit A (234 aa)
  0.999
lpsI
3-oxoacid CoA-transferase subunit A (232 aa)
  0.994
Bpet1425
3-oxoacid CoA-transferase subunit A (111 aa)
  0.992
pcaI4
3-oxoadipate CoA-transferase subunit A (229 aa)
 
  0.974
pcaI1
3-oxoadipate CoA-transferase subunit A (223 aa)
 
  0.973
pcaI2
3-oxoadipate CoA-transferase subunit A (226 aa)
 
  0.973
Bpet3413
3-hydroxyacyl-CoA dehydrogenase (797 aa)
   
  0.972
pcaI3
3-oxoadipate CoA-transferase subunit A (226 aa)
 
  0.961
fadA9
fadA9 (EC-2.3.1.9) (389 aa)
   
 
  0.954
fadA7
acetyl-CoA acetyltransferase (429 aa)
   
 
  0.954
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 340100
Other names: B. petrii, B. petrii DSM 12804, Bordetella petrii, Bordetella petrii DSM 12804, Bordetella petrii str. DSM 12804, Bordetella petrii strain DSM 12804, Bordetella petrii von Wintzingerode et al. 2001
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