STRINGSTRING
rnc protein (Bordetella petrii) - STRING interaction network
"rnc" - Ribonuclease III in Bordetella petrii
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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rncRibonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism (252 aa)    
Predicted Functional Partners:
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism (296 aa)
 
   
  0.978
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination (195 aa)
   
   
  0.932
lepB
lepB (EC-3.4.21.89) (294 aa)
 
   
  0.931
lepA
Membrane GTPase; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back- translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner (597 aa)
 
 
  0.927
rpsB
30S ribosomal protein S2 (249 aa)
   
 
  0.848
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (126 aa)
 
 
  0.821
rpmB
50S ribosomal protein L28 (78 aa)
   
 
  0.792
rpoD
RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (806 aa)
 
 
 
  0.740
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication (682 aa)
 
   
  0.739
trmD
tRNA-methyltransferase (EC-2.1.1.31); Specifically methylates guanosine-37 in various tRNAs (253 aa)
 
   
  0.725
Your Current Organism:
Bordetella petrii
NCBI taxonomy Id: 340100
Other names: B. petrii, B. petrii DSM 12804, Bordetella petrii, Bordetella petrii DSM 12804, Bordetella petrii str. DSM 12804, Bordetella petrii strain DSM 12804, Bordetella petrii von Wintzingerode et al. 2001
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