STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIR80791.1Protocatechuate 4,5-dioxygenase beta subunit. (279 aa)    
Predicted Functional Partners:
LigA
Protocatechuate 4,5-dioxygenase alpha subunit.
 
 
 0.993
SIR80768.1
Protocatechuate 4,5-dioxygenase alpha subunit.
 
     0.907
SIR03113.1
4-oxalomesaconate hydratase.
 
   
 0.791
SIQ98115.1
2-pyrone-4,6-dicarboxylate hydrolase.
 
   
 0.786
SIQ97991.1
4-carboxy-2-hydroxymuconate semialdehyde dehydrogenase.
 
   
 0.778
SIR80812.1
Transcriptional regulator, TetR family.
 
     0.747
LigK
4-carboxy-4-hydroxy-2-oxoadipate aldolase.
 
   
 0.746
SIR23496.1
Predicted metal-dependent hydrolase, TIM-barrel fold.
 
   
 0.731
SIR07013.1
Vanillate O-demethylase monooxygenase subunit.
 
   
 0.542
SIR80835.1
Hypothetical protein.
       0.477
Your Current Organism:
Sphaerotilus natans
NCBI taxonomy Id: 34103
Other names: ATCC 13338, Cladothrix dichotoma, DSM 6575, LMG 7172, LMG:7172, S. natans, Sphaerotilus dichotomus, Sphaerotilus fluitans, Streptothrix fluitans
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.