STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG34407.1Small acid-soluble spore protein F (minor alpha/beta-type SASP). (56 aa)    
Predicted Functional Partners:
SFF98849.1
Putative zinc-finger.
  
     0.636
SFG23616.1
Protein of unknown function.
  
    0.626
SFG34382.1
1,3-propanediol dehydrogenase.
       0.570
SFF98887.1
ABC-2 family transporter protein.
  
     0.559
SFG34339.1
Two-component system, NtrC family, response regulator.
       0.559
SFG34368.1
Two-component system, NtrC family, sensor kinase.
       0.559
SFH13037.1
4 TMS phage holin, superfamily IV.
  
     0.559
SFG87796.1
Germination protein YpeB.
 
   
 0.539
SFG39344.1
Sporulation integral membrane protein YlbJ.
  
     0.511
SFH18847.1
Spore germination protein YaaH.
  
     0.498
Your Current Organism:
Desulfallas arcticus
NCBI taxonomy Id: 341036
Other names: D. arcticus, DSM 17038, Desulfallas arcticus (Vandieken et al. 2006) Watanabe et al. 2018, Desulfotomaculum arcticum, Desulfotomaculum arcticum Vandieken et al. 2006, JCM 12923, low G+C Gram-positive bacterium 15, strain 15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.