STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM82_4492Capsule biosynthesis GfcC family protein. (994 aa)    
Predicted Functional Partners:
DM82_4493
Group 4 capsule polysaccharide formation lipogfcB family protein.
       0.816
thcB
Cytochrome domain protein; P450 116; Belongs to the cytochrome P450 family.
  
 0.642
lgrD_1
NRPS-para261: non-ribosomal peptide synthase TIGR01720 domain protein.
   
 0.641
tycC_2
AA-adenyl-dom: amino acid adenylation domain protein.
   
 0.641
DM82_4494
Hypothetical protein.
       0.551
DM82_4887
Acyltransferase family protein.
   
 0.540
DM82_2447
Eps_transp_fam: exopolysaccharide transport family protein.
 
  
 0.539
etk
cobQ/CobB/MinD/ParA nucleotide binding domain protein.
 
  
 0.526
wzc
Eps_fam: capsular exopolysaccharide family domain protein.
 
  
 0.518
DM82_6107
Polysaccharide biosynthesis/export family protein.
 
  
 0.482
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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