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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hcp1_3VI_effect_Hcp1: type VI secretion system effector, Hcp1 family protein. (161 aa)    
Predicted Functional Partners:
DM82_4980
Hypothetical protein.
 
 
 0.958
DM82_4981
Hypothetical protein.
 
 
 0.954
DM82_3756
Hypothetical protein.
 
 
 0.919
DM82_4618
Hypothetical protein.
 
 
 0.919
motB_2
type_VI_ompA: type VI secretion system OmpA/MotB family protein.
 
  
 0.919
hcp1_2
Hypothetical protein.
  
  
 
0.916
DM82_4619
Hypothetical protein.
 
 
 0.913
hcp1_1
VI_effect_Hcp1: type VI secretion system effector, Hcp1 family protein.
  
  
 
0.912
DM82_4978
Type VI secretion lipofamily protein.
 
  
 0.905
hcpC
Major exported protein.
     
 0.902
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.