Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
DM82_5136metA-pathway of phenol degradation family protein. (247 aa)    
Predicted Functional Partners:
rssA_4
Surface antigen variable number repeat family protein.
 
 
 
 0.889
fbp_2
FKBP-type peptidyl-prolyl cis-trans isomerase family protein.
    
 
 0.813
yaeT
Outer membrane assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.755
yfiO
Outer membrane assembly lipoYfiO family protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.751
DM82_2787
Tetratricopeptide repeat family protein.
    
 
 0.751
DM82_4697
TIGR02594 family protein.
  
     0.702
DM82_5444
ompW family protein.
  
   
 0.697
DM82_4249
tonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein.
  
   
 0.696
rstB_1
His Kinase A domain protein.
  
     0.693
DM82_883
Hypothetical protein.
  
     0.641
Your Current Organism:
Burkholderia oklahomensis
NCBI taxonomy Id: 342113
Other names: B. oklahomensis, Burkholderia oklahomensis Glass et al. 2006, CCUG 51349, DSM 21774, LMG 23618, LMG:23618, NCTC 13387, strain C6786
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