STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_1195KEGG: hch:HCH_02721 hypothetical protein. (355 aa)    
Predicted Functional Partners:
Patl_1196
KEGG: nar:Saro_1349 hypothetical protein.
 
     0.936
Patl_1198
PFAM: glycosyl transferase, family 2; KEGG: pfo:Pfl_2017 glycosyl transferase, family 2.
 
   
 0.882
Patl_1197
PFAM: glycosyl transferase, group 1; KEGG: gme:Gmet_2001 glycosyl transferase, group 1.
 
     0.875
Patl_1199
Hypothetical protein.
 
     0.871
Patl_1201
PFAM: TPR repeat Tetratricopeptide TPR_2; SMART: Tetratricopeptide region; KEGG: cps:CPS_0310 TPR domain protein.
 
     0.869
Patl_1184
PFAM: O-antigen polymerase; KEGG: vpa:VP1464 putative membrane protein of ExoQ family, involved in exopolysaccharide production.
 
     0.816
Patl_1193
PFAM: glycosyl transferase, group 1; KEGG: neu:NE1796 glycosyl transferase group 1.
 
     0.812
Patl_1172
PFAM: polysaccharide deacetylase; KEGG: eba:ebA4258 polysaccharide deacetylase.
 
     0.801
Patl_1173
TIGRFAM: eight transmembrane protein EpsH; KEGG: neu:NE1797 hypothetical protein.
 
     0.801
Patl_1194
TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II asparagine synthase; KEGG: neu:NE1795 glutamine amidotransferase class-II:asparagine synthase.
 
     0.798
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.