STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glgB1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily. (729 aa)    
Predicted Functional Partners:
Patl_1635
4-alpha-glucanotransferase; KEGG: ppr:PBPRB1329 putative 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77.
 
 0.996
glgA
Glycogen synthase (ADP-glucose); Synthesizes alpha-1,4-glucan chains using ADP-glucose.
 
 0.995
Patl_1637
KEGG: sru:SRU_0849 glycogen debranching enzyme GlgX; TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13-like alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; Belongs to the glycosyl hydrolase 13 family.
 
 
0.995
Patl_2197
Glycogen/starch/alpha-glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
 
 0.991
Patl_1941
Alpha-1,6-glucosidase, pullulanase-type; KEGG: cps:CPS_1694 putative pullulanase; TIGRFAM: alpha-1,6-glucosidases, pullulanase-type; PFAM: glycoside hydrolase, family 13-like; Belongs to the glycosyl hydrolase 13 family.
 
 
 0.971
Patl_2113
Maltooligosyl trehalose hydrolase; PFAM: glycoside hydrolase, family 13-like alpha amylase, catalytic region; SMART: Alpha amylase, catalytic subdomain; KEGG: rba:RB548 1,4-alpha-glucan branching enzyme.
  
  
 
0.926
Patl_2859
Alpha-amylase; KEGG: dme:CG18730-PA CG18730 gene product from transcript CG18730-RA; PFAM: alpha amylase, catalytic region alpha amylase, C-terminal all-beta; SMART: Alpha amylase, catalytic subdomain.
     
  0.900
Patl_2198
TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: phosphoglucomutase/phosphomannomutase C terminal phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: cps:CPS_1581 phosphoglucomutase, alpha-D-glucose phosphate-specific.
  
 0.898
Patl_3581
PFAM: Nucleotidyl transferase; KEGG: son:SO1498 glucose-1-phosphate adenylyltransferase.
 
  
 0.895
glgC1
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
 
  
 0.894
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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