STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_38934-hydroxybenzoate 3-monooxygenase; KEGG: pae:PA0247 p-hydroxybenzoate hydroxylase; TIGRFAM: 4-hydroxybenzoate 3-monooxygenase; PFAM: monooxygenase, FAD-binding. (404 aa)    
Predicted Functional Partners:
Patl_3885
Protocatechuate 4,5-dioxygenase beta subunit; PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: rpa:RPA4702 protocatechuate 4,5-dioxygenase, beta chain.
 
  
 0.973
Patl_3886
Protocatechuate 4,5-dioxygenase alpha subunit; PFAM: Extradiol ring-cleavage dioxygenase LigAB, LigA subunit; KEGG: rpb:RPB_0873 protocatechuate 4,5-dioxygenase.
 
  
 0.968
Patl_3892
Transcriptional regulator, AraC family; PFAM: helix-turn-helix, AraC type AraC protein, arabinose-binding/dimerisation; KEGG: bja:bll3668 transcriptional regulatory protein.
 
   
 0.789
Patl_0844
PFAM: Rieske [2Fe-2S] region; KEGG: pfl:PFL_3471 vanillate O-demethylase, oxygenase subunit.
  
  
 0.724
Patl_3887
PFAM: amidohydrolase 2; KEGG: rpb:RPB_0874 amidohydrolase 2.
  
   
 0.697
Patl_3888
4-oxalomesaconate hydratase; PFAM: amidohydrolase 2; KEGG: xcb:XC_4121 4-oxalomesaconate hydratase.
 
  
 0.691
Patl_3884
PFAM: oxidoreductase-like; KEGG: rpa:RPA4703 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase.
  
  
 0.650
Patl_3890
4-carboxy-4-hydroxy-2-oxoadipate aldolase; PFAM: Dimethylmenaquinone methyltransferase; KEGG: ppu:PP2514 hypothetical protein.
 
   
 0.620
Patl_0859
PFAM: monooxygenase, FAD-binding FAD dependent oxidoreductase; KEGG: bja:bll6425 hypothetical protein.
  
   
 0.554
Patl_3889
Methylitaconate delta2-delta3-isomerase; PFAM: protein of unknown function DUF453; KEGG: ppu:PP2513 hypothetical protein.
  
   
 0.540
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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