STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_3931PFAM: Pyridoxal-dependent decarboxylase; KEGG: cps:CPS_1007 putative decarboxylase. (536 aa)    
Predicted Functional Partners:
glsA
L-glutaminase; PFAM: glutaminase; KEGG: ret:RHE_CH02311 glutaminase protein; Belongs to the glutaminase family.
  
 
 0.943
panC
Pantothenate synthetase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
  
 
 0.942
Patl_3748
PFAM: glutamine amidotransferase, class-II glutamate synthase, alpha subunit-like ferredoxin-dependent glutamate synthase glutamate synthase; KEGG: vch:VC2376 glutamate synthase, large subunit.
    
 0.940
Patl_1025
KEGG: vfi:VF0098 glutamine synthetase; TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region glutamine synthetase, beta-Grasp.
    
 0.919
Patl_0286
Glutamate dehydrogenase (NADP); PFAM: Glu/Leu/Phe/Val dehydrogenase, C terminal Glu/Leu/Phe/Val dehydrogenase, dimerisation region; KEGG: pha:PSHAa1392 glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.914
Patl_1885
Gamma-glutamyltransferase 1, Threonine peptidase, MEROPS family T03; KEGG: tcx:Tcr_1715 gamma-glutamyltransferase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase.
     
 0.911
Patl_2218
L-proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.911
Patl_3459
Gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase; KEGG: ccr:CC0531 gamma-glutamyltransferase.
     
 0.911
Patl_3760
PFAM: aldehyde dehydrogenase; KEGG: eba:ebA3161 P-hydroxybenzaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.910
Patl_2002
PFAM: NAD-glutamate dehydrogenase; KEGG: pha:PSHAa1670 glutamate dehydrogenase.
     
 0.903
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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