STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Patl_4003PFAM: DegT/DnrJ/EryC1/StrS aminotransferase aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: nma:NMA0638 pilin glycosylation protein; Belongs to the DegT/DnrJ/EryC1 family. (392 aa)    
Predicted Functional Partners:
Patl_4005
PFAM: sugar transferase; KEGG: eli:ELI_13365 putative UDP-galactose phosphate transferase.
  
 0.969
Patl_4002
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase 3-beta hydroxysteroid dehydrogenase/isomerase polysaccharide biosynthesis protein CapD dTDP-4-dehydrorhamnose reductase Male sterility-like; KEGG: plu:plu4809 WblM protein.
 
  
 0.968
Patl_1070
PFAM: sugar transferase; KEGG: vvu:VV21582 sugar transferase involved in lipopolysaccharide synthesis.
 
  
 0.915
Patl_4004
KEGG: dps:DP0029 pilin glycosylation protein.
 
     0.907
Patl_4000
Protein-tyrosine kinase; PFAM: lipopolysaccharide biosynthesis; KEGG: vch:VC0937 exopolysaccharide biosynthesis protein, putative.
 
  
 0.866
Patl_4006
PFAM: glycosyl transferase, group 1; KEGG: bja:bll3648 probable glycosyl transferase.
 
  
 0.803
Patl_4009
PFAM: glycosyl transferase, group 1; KEGG: fra:Francci3_1310 glycosyl transferase, group 1.
 
  
 0.792
Patl_4007
PFAM: glycosyl transferase, group 1; KEGG: pca:Pcar_1798 glycosyltransferase-like.
 
  
 0.791
Patl_4010
KEGG: cef:CE0378 hypothetical protein.
 
  
 0.786
Patl_4001
PFAM: polysaccharide export protein; KEGG: hch:HCH_04680 periplasmic protein involved in polysaccharide export.
     
 0.779
Your Current Organism:
Pseudoalteromonas atlantica
NCBI taxonomy Id: 342610
Other names: P. atlantica T6c, Pseudoalteromonas atlantica T6c, Pseudoalteromonas atlantica str. T6c, Pseudoalteromonas atlantica strain T6c
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