STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001418085_03103Unannotated protein. (439 aa)    
Predicted Functional Partners:
GCA_001418085_01501
Unannotated protein.
  
 
  0.806
GCA_001418085_02262
Unannotated protein.
  
 
  0.805
GCA_001418085_03010
Unannotated protein.
  
  
  0.742
GCA_001418085_00391
Unannotated protein.
   
  0.697
GCA_001418085_00763
Unannotated protein.
   
  0.697
GCA_001418085_02442
Unannotated protein.
   
  0.697
GCA_001418085_03000
Unannotated protein.
   
  0.697
GCA_001418085_03341
Unannotated protein.
   
  0.697
GCA_001418085_01049
Unannotated protein.
   
  0.692
GCA_001418085_01824
Unannotated protein.
  
  
 
0.684
Your Current Organism:
Lacinutrix algicola
NCBI taxonomy Id: 342954
Other names: JCM 13825, KCCM 42313, L. algicola, Lacinutrix algicola Nedashkovskaya et al. 2008, Lacinutrix sp. AKS293, strain AKS293
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.