STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFU37028.1LysM domain-containing protein. (406 aa)    
Predicted Functional Partners:
SFU90415.1
Type IV pilus assembly protein PilQ.
 
 
 
 0.993
SFU31528.1
Hypothetical protein.
  
 
 0.967
SFU90432.1
Type IV pilus assembly protein PilO.
 
 
   0.953
SFU90447.1
Type IV pilus assembly protein PilN.
  
 
   0.953
SFU90456.1
Type IV pilus assembly protein PilM.
  
 
   0.952
SFU90422.1
Type IV pilus assembly protein PilP.
 
 
   0.929
SFU37014.1
DNA protecting protein DprA.
       0.823
SFU78030.1
Type IV pilus assembly protein PilZ.
  
    0.780
SFU52066.1
Uncharacterized conserved protein, DUF58 family, contains vWF domain.
 
     0.758
SFU52083.1
Transglutaminase-like superfamily protein.
  
   
 0.754
Your Current Organism:
Acidovorax caeni
NCBI taxonomy Id: 343013
Other names: A. caeni, Acidovorax caeni Heylen et al. 2008, Acidovorax sp. R-24607, Acidovorax sp. R-24608, Acidovorax sp. R-24613, Acidovorax sp. R-24614, DSM 19327, LMG 24103, LMG:24103, strain R-24608
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