STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000805695_00353Unannotated protein. (464 aa)    
Predicted Functional Partners:
cirA_3
Unannotated protein.
 
     0.948
GCA_000805695_01723
Unannotated protein.
 
     0.708
mioC
Unannotated protein.
 
     0.699
GCA_000805695_00158
Unannotated protein.
  
     0.693
GCA_000805695_01724
Unannotated protein.
 
     0.645
GCA_000805695_00470
Unannotated protein.
  
     0.604
GCA_000805695_02707
Unannotated protein.
  
     0.571
EGI89_01160
Unannotated protein.
  
     0.565
GCA_000805695_00354
Unannotated protein.
       0.564
EGI89_04790
Unannotated protein.
  
     0.533
Your Current Organism:
Empedobacter falsenii
NCBI taxonomy Id: 343874
Other names: CCUG 51536, CIP 108861, E. falsenii, Empedobacter falsenii (Kampfer et al. 2006) Zhang et al. 2014, Wautersiella falsenii, Wautersiella falsenii (Kampfer et al. 2006) emend. Zhang et al. 2014, strain NF 993
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.