STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdtLMultidrug resistance protein MdtL; Identified by match to protein family HMM PF07690. (391 aa)    
Predicted Functional Partners:
yidZ
Transcriptional regulator, LysR family; Involved in anaerobic NO protection.
 
    0.920
tnaB
Low affinity tryptophan permease TnaB; Identified by similarity to SP:P23173; match to protein family HMM PF03222; match to protein family HMM TIGR00837.
       0.493
ACD09840.1
Conserved hypothetical protein.
       0.487
ACD09684.1
NADPH-dependent FMN reductase; Identified by match to protein family HMM PF03358.
       0.440
ACD09775.1
Conserved hypothetical protein; ylbF; identified by similarity to GB:ABB65130.1.
  
     0.426
ACD07582.1
Putative lipoprotein; Identified by match to protein family HMM PF03891.
  
     0.417
trmE
tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
     
 0.406
ACD07718.1
Side tail fiber protein; Identified by match to protein family HMM PF08400.
  
     0.403
Your Current Organism:
Shigella boydii
NCBI taxonomy Id: 344609
Other names: S. boydii CDC 3083-94, Shigella boydii BS512, Shigella boydii CDC 3083-94, Shigella boydii str. CDC 3083-94, Shigella boydii strain CDC 3083-94
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