STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG68863.1Poly-beta-hydroxybutyrate polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (360 aa)    
Predicted Functional Partners:
KRG67903.1
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.939
KRG70863.1
3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.917
KRG70912.1
3-ketoacyl-ACP reductase; Catalyzes the conversion of 3-hydroxyacyl-CoA to 3-oxyacyl-CoA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 0.827
KRG71198.1
Polyhydroxyalkanoate synthesis repressor PhaR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.819
KRG71125.1
3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.735
KRG71134.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.734
KRG67568.1
Malic enzyme; NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.604
KRG68862.1
Stress-responsive transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.578
KRG68861.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.575
KRG68313.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.456
Your Current Organism:
Pseudoxanthomonas dokdonensis
NCBI taxonomy Id: 344882
Other names: CIP 108839, DSM 21858, KCTC 12543, Pseudoxanthomonas dokdonensis (Yoon et al. 2006) Lee et al. 2008, Stenotrophomonas dokdonensis, Stenotrophomonas dokdonensis Yoon et al. 2006, strain DS-16
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.