STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5167_006240Ribosomal_L7Ae domain-containing protein. (258 aa)    
Predicted Functional Partners:
C5167_015098
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.994
C5167_006491
Ubiquitin-like domain-containing protein.
   
 0.991
C5167_004736
TRASH domain-containing protein.
  
 0.982
C5167_011268
Uncharacterized protein.
  
 0.982
C5167_033419
Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.
  
 0.982
C5167_050177
Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.
  
 0.982
C5167_001889
Uncharacterized protein.
  
 0.981
C5167_045620
Uncharacterized protein.
  
 0.981
C5167_002582
Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.
   
 0.974
C5167_046868
Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.
   
 0.974
Your Current Organism:
Papaver somniferum
NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy
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