C5167_048768 protein (Papaver somniferum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C5167_048768

Uncharacterized protein. (147 aa)

Predicted Functional Partners:

C5167_013624

0.845

C5167_045425

0.642

C5167_002219

0.640

C5167_020779

0.624

C5167_038532

0.609

C5167_010926

0.609

C5167_015854

0.608

C5167_023070

0.606

C5167_003432

0.606

C5167_040764

0.564

Your Current Organism:

Papaver somniferum

NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C5167_002219	C5167_003432	A0A4Y7KZ31	A0A4Y7L4Y0	Uncharacterized protein.	F-box domain-containing protein.	0.606
C5167_002219	C5167_010926	A0A4Y7KZ31	A0A4Y7K1K3	Uncharacterized protein.	Peptidylprolyl isomerase.	0.609
C5167_002219	C5167_013624	A0A4Y7KZ31	A0A4Y7J0V8	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.845
C5167_002219	C5167_015854	A0A4Y7KZ31	A0A4Y7JBI8	Uncharacterized protein.	Uncharacterized protein.	0.608
C5167_002219	C5167_020779	A0A4Y7KZ31	A0A4Y7IXA4	Uncharacterized protein.	Uncharacterized protein.	0.624
C5167_002219	C5167_023070	A0A4Y7KZ31	A0A4Y7JKQ0	Uncharacterized protein.	PMD domain-containing protein.	0.606
C5167_002219	C5167_038532	A0A4Y7KZ31	A0A4Y7I9H3	Uncharacterized protein.	Peptidylprolyl isomerase.	0.609
C5167_002219	C5167_040764	A0A4Y7KZ31	A0A4Y7IK35	Uncharacterized protein.	Uncharacterized protein.	0.564
C5167_002219	C5167_048768	A0A4Y7KZ31	A0A4Y7KN21	Uncharacterized protein.	Uncharacterized protein.	0.640
C5167_003432	C5167_002219	A0A4Y7L4Y0	A0A4Y7KZ31	F-box domain-containing protein.	Uncharacterized protein.	0.606
C5167_003432	C5167_015854	A0A4Y7L4Y0	A0A4Y7JBI8	F-box domain-containing protein.	Uncharacterized protein.	0.996
C5167_003432	C5167_045425	A0A4Y7L4Y0	A0A4Y7LCA0	F-box domain-containing protein.	Uncharacterized protein.	0.606
C5167_003432	C5167_048768	A0A4Y7L4Y0	A0A4Y7KN21	F-box domain-containing protein.	Uncharacterized protein.	0.606
C5167_010926	C5167_002219	A0A4Y7K1K3	A0A4Y7KZ31	Peptidylprolyl isomerase.	Uncharacterized protein.	0.609
C5167_010926	C5167_020779	A0A4Y7K1K3	A0A4Y7IXA4	Peptidylprolyl isomerase.	Uncharacterized protein.	0.636
C5167_010926	C5167_045425	A0A4Y7K1K3	A0A4Y7LCA0	Peptidylprolyl isomerase.	Uncharacterized protein.	0.609
C5167_010926	C5167_048768	A0A4Y7K1K3	A0A4Y7KN21	Peptidylprolyl isomerase.	Uncharacterized protein.	0.609
C5167_013624	C5167_002219	A0A4Y7J0V8	A0A4Y7KZ31	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.845
C5167_013624	C5167_015854	A0A4Y7J0V8	A0A4Y7JBI8	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.785
C5167_013624	C5167_020779	A0A4Y7J0V8	A0A4Y7IXA4	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Uncharacterized protein.	0.904