STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C5167_002465Uncharacterized protein. (106 aa)    
Predicted Functional Partners:
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
      
 0.732
C5167_006706
Carboxypeptidase; Belongs to the peptidase S10 family.
     
 0.640
C5167_018296
Uncharacterized protein.
      
 0.637
C5167_020134
Hat1_N domain-containing protein.
      
 0.637
C5167_005995
Uncharacterized protein; Belongs to the peptidase S10 family.
     
 0.501
C5167_017616
Uncharacterized protein.
      
 0.497
C5167_014105
Uncharacterized protein.
      
 0.497
C5167_022687
Ipi1_N domain-containing protein.
    
 0.483
C5167_025140
Uncharacterized protein.
    
 0.475
C5167_048958
Uncharacterized protein.
    
 0.475
Your Current Organism:
Papaver somniferum
NCBI taxonomy Id: 3469
Other names: P. somniferum, Papaver somniferum L., Papaver somniferum convar. nigrum (Hayne) Alef., opium poppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.