STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ciaROmpR family DNA-binding response regulator. (228 aa)    
Predicted Functional Partners:
KRN95743.1
Signal transduction histidine kinase.
 0.999
hpk3
Histidine protein kinase.
 0.888
hpk5
Signal transduction histidine kinase.
 0.863
KRN97099.1
Hypothetical protein.
 0.845
htrA
Serine protease do-like HtrA.
 
  
 0.802
KRN97307.1
Two-component sensor histidine kinase.
 0.755
KRN95741.1
Hypothetical protein.
       0.682
ribA
GTP cyclohydrolase II; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
     
 0.669
KRN96191.1
Uroporphyrinogen-iii c-methyltransferase coba.
     
 0.646
pyk
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.645
Your Current Organism:
Lactobacillus siliginis
NCBI taxonomy Id: 348151
Other names: DSM 22696, JCM 16155, KCTC 3985, L. siliginis, Lactobacillus siliginis Aslam et al. 2006, NBRC 101315, strain M1-212
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.