Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
NP_2006A | ureA | NP_2006A | NP_2012A | Uncharacterized protein. | Urease gamma subunit; Belongs to the urease gamma subunit family. | 0.581 |
NP_2006A | ureB | NP_2006A | NP_2008A | Uncharacterized protein. | Urease beta subunit; Belongs to the urease beta subunit family. | 0.581 |
NP_2006A | ureC | NP_2006A | NP_2010A | Uncharacterized protein. | Urease alpha subunit; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | 0.581 |
NP_2006A | ureD | NP_2006A | NP_2016A | Uncharacterized protein. | Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.581 |
NP_2006A | ureE | NP_2006A | NP_2018A | Uncharacterized protein. | Urease accessory protein UreE; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | 0.581 |
NP_2006A | ureF | NP_2006A | NP_2020A | Uncharacterized protein. | Urease accessory protein UreF. | 0.581 |
NP_2006A | ureG | NP_2006A | NP_2014A | Uncharacterized protein. | Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | 0.581 |
NP_3070A | amtB | NP_3070A | NP_0922A | GNAT family acetyltransferase. | Transport protein (probable substrate ammonium); Belongs to the P(II) protein family. | 0.428 |
NP_3070A | ureA | NP_3070A | NP_2012A | GNAT family acetyltransferase. | Urease gamma subunit; Belongs to the urease gamma subunit family. | 0.513 |
NP_3070A | ureB | NP_3070A | NP_2008A | GNAT family acetyltransferase. | Urease beta subunit; Belongs to the urease beta subunit family. | 0.479 |
NP_3070A | ureC | NP_3070A | NP_2010A | GNAT family acetyltransferase. | Urease alpha subunit; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | 0.487 |
NP_3070A | ureD | NP_3070A | NP_2016A | GNAT family acetyltransferase. | Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.505 |
amtB | NP_3070A | NP_0922A | NP_3070A | Transport protein (probable substrate ammonium); Belongs to the P(II) protein family. | GNAT family acetyltransferase. | 0.428 |
amtB | ureA | NP_0922A | NP_2012A | Transport protein (probable substrate ammonium); Belongs to the P(II) protein family. | Urease gamma subunit; Belongs to the urease gamma subunit family. | 0.512 |
amtB | ureB | NP_0922A | NP_2008A | Transport protein (probable substrate ammonium); Belongs to the P(II) protein family. | Urease beta subunit; Belongs to the urease beta subunit family. | 0.585 |
amtB | ureC | NP_0922A | NP_2010A | Transport protein (probable substrate ammonium); Belongs to the P(II) protein family. | Urease alpha subunit; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. | 0.574 |
amtB | ureD | NP_0922A | NP_2016A | Transport protein (probable substrate ammonium); Belongs to the P(II) protein family. | Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.572 |
amtB | ureF | NP_0922A | NP_2020A | Transport protein (probable substrate ammonium); Belongs to the P(II) protein family. | Urease accessory protein UreF. | 0.459 |
amtB | ureG | NP_0922A | NP_2014A | Transport protein (probable substrate ammonium); Belongs to the P(II) protein family. | Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | 0.550 |
ureA | NP_2006A | NP_2012A | NP_2006A | Urease gamma subunit; Belongs to the urease gamma subunit family. | Uncharacterized protein. | 0.581 |
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