STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NP_5028AProbable transmembrane glycoprotein / HTH domain protein. (371 aa)    
Predicted Functional Partners:
ginS
DNA replication factor GINS.
  
     0.705
NP_5030A
Uncharacterized protein.
       0.704
oapC
Origin-associated protein OapC.
  
     0.690
NP_4984A
PRC domain protein.
  
     0.665
rps14b
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles. Belongs to the universal ribosomal protein uS14 family. Zinc-binding uS14 subfamily.
  
     0.653
sec11
Signal peptidase I.
  
     0.616
pilA2
Pilin PilA.
  
     0.616
NP_5026A
arNOG05179 family protein (DUF87-related AAA-type ATPase).
       0.615
NP_5032A
DUF1628 domain protein.
       0.604
sepF
Probable SepF protein.
  
     0.593
Your Current Organism:
Natronomonas pharaonis
NCBI taxonomy Id: 348780
Other names: N. pharaonis DSM 2160, Natronomonas pharaonis ATCC 35678, Natronomonas pharaonis DSM 2160, Natronomonas pharaonis Gabara, Natronomonas pharaonis JCM 8858, Natronomonas pharaonis str. DSM 2160, Natronomonas pharaonis strain DSM 2160
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.