Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABP69598.1 | ABP69601.1 | Rsph17025_0692 | Rsph17025_0695 | TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; Belongs to the SEDS family. | Hypothetical protein. | 0.839 |
ABP69598.1 | ddl | Rsph17025_0692 | Rsph17025_0697 | TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; Belongs to the SEDS family. | D-alanine--D-alanine ligase; Cell wall formation. | 0.985 |
ABP69598.1 | ftsA | Rsph17025_0692 | Rsph17025_0699 | TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; Belongs to the SEDS family. | Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family. | 0.959 |
ABP69598.1 | ftsQ | Rsph17025_0692 | Rsph17025_0698 | TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; Belongs to the SEDS family. | Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily. | 0.994 |
ABP69598.1 | murA | Rsph17025_0692 | Rsph17025_0591 | TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; Belongs to the SEDS family. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.821 |
ABP69598.1 | murB | Rsph17025_0692 | Rsph17025_0696 | TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; Belongs to the SEDS family. | UDP-N-acetylmuramate dehydrogenase; Cell wall formation. | 0.958 |
ABP69598.1 | murC | Rsph17025_0692 | Rsph17025_0694 | TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; Belongs to the SEDS family. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.996 |
ABP69598.1 | murD | Rsph17025_0692 | Rsph17025_0690 | TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; Belongs to the SEDS family. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.986 |
ABP69598.1 | murG | Rsph17025_0692 | Rsph17025_0693 | TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; Belongs to the SEDS family. | Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.996 |
ABP69601.1 | ABP69598.1 | Rsph17025_0695 | Rsph17025_0692 | Hypothetical protein. | TIGRFAM: cell division protein FtsW; PFAM: cell cycle protein; Belongs to the SEDS family. | 0.839 |
ABP69601.1 | ddl | Rsph17025_0695 | Rsph17025_0697 | Hypothetical protein. | D-alanine--D-alanine ligase; Cell wall formation. | 0.762 |
ABP69601.1 | ftsA | Rsph17025_0695 | Rsph17025_0699 | Hypothetical protein. | Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family. | 0.760 |
ABP69601.1 | ftsQ | Rsph17025_0695 | Rsph17025_0698 | Hypothetical protein. | Cell division protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily. | 0.761 |
ABP69601.1 | murB | Rsph17025_0695 | Rsph17025_0696 | Hypothetical protein. | UDP-N-acetylmuramate dehydrogenase; Cell wall formation. | 0.850 |
ABP69601.1 | murC | Rsph17025_0695 | Rsph17025_0694 | Hypothetical protein. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.839 |
ABP69601.1 | murD | Rsph17025_0695 | Rsph17025_0690 | Hypothetical protein. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.516 |
ABP69601.1 | murG | Rsph17025_0695 | Rsph17025_0693 | Hypothetical protein. | Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. | 0.839 |
ABP71839.1 | murA | Rsph17025_2953 | Rsph17025_0591 | PFAM: Nucleotidyl transferase. | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. | 0.809 |
ABP71839.1 | murB | Rsph17025_2953 | Rsph17025_0696 | PFAM: Nucleotidyl transferase. | UDP-N-acetylmuramate dehydrogenase; Cell wall formation. | 0.902 |
ABP71839.1 | murC | Rsph17025_2953 | Rsph17025_0694 | PFAM: Nucleotidyl transferase. | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. | 0.803 |
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