Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABP69756.1 | ABP70344.1 | Rsph17025_0852 | Rsph17025_1450 | Hydrolase or acyltransferase (alpha/beta hydrolase superfamily)-like protein. | PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit. | 0.481 |
ABP69756.1 | ABP71392.1 | Rsph17025_0852 | Rsph17025_2504 | Hydrolase or acyltransferase (alpha/beta hydrolase superfamily)-like protein. | PFAM: ATP12 ATPase. | 0.573 |
ABP69756.1 | ABP71766.1 | Rsph17025_0852 | Rsph17025_2880 | Hydrolase or acyltransferase (alpha/beta hydrolase superfamily)-like protein. | PFAM: ETC complex I subunit conserved region. | 0.667 |
ABP70344.1 | ABP69756.1 | Rsph17025_1450 | Rsph17025_0852 | PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit. | Hydrolase or acyltransferase (alpha/beta hydrolase superfamily)-like protein. | 0.481 |
ABP70344.1 | ABP71392.1 | Rsph17025_1450 | Rsph17025_2504 | PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit. | PFAM: ATP12 ATPase. | 0.698 |
ABP70344.1 | ABP71521.1 | Rsph17025_1450 | Rsph17025_2634 | PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit. | Hypothetical protein. | 0.422 |
ABP70344.1 | ABP71766.1 | Rsph17025_1450 | Rsph17025_2880 | PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit. | PFAM: ETC complex I subunit conserved region. | 0.797 |
ABP71391.1 | ABP71392.1 | Rsph17025_2503 | Rsph17025_2504 | TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein, family 3. | PFAM: ATP12 ATPase. | 0.623 |
ABP71391.1 | ABP71393.1 | Rsph17025_2503 | Rsph17025_2505 | TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein, family 3. | Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.622 |
ABP71391.1 | ABP71394.1 | Rsph17025_2503 | Rsph17025_2506 | TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein, family 3. | Recombination protein MgsA; PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase. | 0.487 |
ABP71392.1 | ABP69756.1 | Rsph17025_2504 | Rsph17025_0852 | PFAM: ATP12 ATPase. | Hydrolase or acyltransferase (alpha/beta hydrolase superfamily)-like protein. | 0.573 |
ABP71392.1 | ABP70344.1 | Rsph17025_2504 | Rsph17025_1450 | PFAM: ATP12 ATPase. | PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit. | 0.698 |
ABP71392.1 | ABP71391.1 | Rsph17025_2504 | Rsph17025_2503 | PFAM: ATP12 ATPase. | TIGRFAM: cationic amino acid ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein, family 3. | 0.623 |
ABP71392.1 | ABP71393.1 | Rsph17025_2504 | Rsph17025_2505 | PFAM: ATP12 ATPase. | Ribosomal large subunit pseudouridine synthase C; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. | 0.897 |
ABP71392.1 | ABP71394.1 | Rsph17025_2504 | Rsph17025_2506 | PFAM: ATP12 ATPase. | Recombination protein MgsA; PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase. | 0.628 |
ABP71392.1 | ABP71521.1 | Rsph17025_2504 | Rsph17025_2634 | PFAM: ATP12 ATPase. | Hypothetical protein. | 0.584 |
ABP71392.1 | ABP71766.1 | Rsph17025_2504 | Rsph17025_2880 | PFAM: ATP12 ATPase. | PFAM: ETC complex I subunit conserved region. | 0.606 |
ABP71392.1 | atpA | Rsph17025_2504 | Rsph17025_2203 | PFAM: ATP12 ATPase. | ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | 0.561 |
ABP71392.1 | frr | Rsph17025_2504 | Rsph17025_2152 | PFAM: ATP12 ATPase. | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. | 0.563 |
ABP71392.1 | rplQ | Rsph17025_2504 | Rsph17025_2509 | PFAM: ATP12 ATPase. | PFAM: ribosomal protein L17. | 0.535 |
page 1 of 3