STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hhal_0704tRNA-processing RNAse BN; TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; KEGG: aeh:Mlg_0521 putative ribonuclease BN. (451 aa)    
Predicted Functional Partners:
acyP
PFAM: acylphosphatase; KEGG: csa:Csal_1839 acylphosphatase.
       0.812
Hhal_0706
KEGG: aeh:Mlg_0519 putative transmembrane protein.
  
    0.654
Hhal_0153
TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG: noc:Noc_0720 GTP-binding protein TypA.
 
    0.646
Hhal_0705
PFAM: NADPH-dependent FMN reductase; flavodoxin/nitric oxide synthase; KEGG: psb:Psyr_3703 flavodoxin/nitric oxide synthase; Belongs to the WrbA family.
       0.641
Hhal_0052
PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; KEGG: aeh:Mlg_1601 AMP-dependent synthetase and ligase.
   
 
 0.610
birA
biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
     
 0.558
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.535
Hhal_0352
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: aeh:Mlg_0217 4Fe-4S ferredoxin, iron-sulfur binding domain protein.
  
  
 0.502
Hhal_0252
PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: aeh:Mlg_1037 GCN5-related N-acetyltransferase.
 
    0.501
Hhal_0280
PFAM: NifQ family protein; KEGG: dar:Daro_1448 NifQ.
  
  
 0.494
Your Current Organism:
Halorhodospira halophila
NCBI taxonomy Id: 349124
Other names: H. halophila SL1, Halorhodospira halophila DSM 244, Halorhodospira halophila SL 1, Halorhodospira halophila SL1, Halorhodospira halophila str. SL1, Halorhodospira halophila strain SL1
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