STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_0124KEGG: swo:Swol_0093 phosphoprotein phosphatase; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein. (824 aa)    
Predicted Functional Partners:
Dred_0685
Sporulation factor SpoIIGA, Unknown type peptidase, MEROPS family U04; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
  
 0.966
Dred_0458
KEGG: tte:TTE2552 pro-sigma-E processing factor spoIIR.
  
   
 0.875
Dred_0687
RNA polymerase, sigma subunit, RpsG/SigG; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.872
Dred_3145
TIGRFAM: regulatory protein, DeoR; KEGG: chy:CHY_2534 stage III sporulation protein D.
  
   
 0.866
Dred_1056
KEGG: mta:Moth_1536 hypothetical protein.
  
   
 0.848
Dred_0113
TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: chy:CHY_0202 stage V sporulation protein T.
 
   
 0.842
Dred_1163
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
   
 0.831
Dred_2503
PFAM: Stage II sporulation P family protein; KEGG: mta:Moth_0578 hypothetical protein.
  
   
 0.815
Dred_0118
PFAM: YabP family protein; KEGG: sth:STH3228 hypothetical protein.
 
     0.810
Dred_1062
KEGG: dsy:DSY2369 hypothetical protein.
  
   
 0.799
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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