STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_0354PFAM: OmpA/MotB domain protein; KEGG: dsy:DSY0295 hypothetical protein. (236 aa)    
Predicted Functional Partners:
Dred_0355
PFAM: MotA/TolQ/ExbB proton channel; KEGG: dsy:DSY0294 hypothetical protein.
 
 0.999
Dred_2443
PFAM: MotA/TolQ/ExbB proton channel; KEGG: chy:CHY_0963 chemotaxis MotA protein.
 
 0.997
Dred_2410
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: protein of unknown function DUF1078 domain protein; KEGG: mta:Moth_0769 flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
 
  
 0.951
Dred_2411
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
 
  
 0.950
Dred_2407
PFAM: flagellar motor switch protein FliG; KEGG: chy:CHY_0994 flagellar motor protein.
 
  
 0.936
flgK
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: bld:BLi03785 flagellar hook-associated protein 1 (HAP1); RBL00320.
 
  
 0.931
Dred_2415
PFAM: flagellar protein FliS; KEGG: tte:TTE0506 Flagellar protein.
 
  
 0.929
Dred_2380
CheC, inhibitor of MCP methylation; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: chy:CHY_1020 flagellar motor switch protein.
 
  
 0.924
Dred_2381
PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: chy:CHY_1019 flagellar motor switch protein FliM.
 
  
 0.919
Dred_2442
PFAM: OmpA/MotB domain protein; KEGG: chy:CHY_0964 flagellar motor protein MotB.
  
  
 
0.913
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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