STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_0824PFAM: SAF domain; KEGG: mta:Moth_0334 Flp pilus assembly CpaB. (270 aa)    
Predicted Functional Partners:
Dred_0826
KEGG: mta:Moth_0336 hypothetical protein.
  
  
 0.878
Dred_0825
KEGG: mta:Moth_0335 type II secretion system protein E.
  
  
 0.805
Dred_0827
KEGG: mta:Moth_0337 hypothetical protein.
       0.735
Dred_2110
PFAM: Flp/Fap pilin component; KEGG: dde:Dde_2357 pilin, putative.
  
  
 0.730
Dred_0828
Hypothetical protein.
       0.676
Dred_0829
Hypothetical protein; KEGG: sus:Acid_2221 peptidase A24A, prepilin type IV.
  
  
 0.671
Dred_2145
KEGG: ava:Ava_4779 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
   
    0.617
Dred_0807
Hypothetical protein; KEGG: art:Arth_2927 type II secretion system protein.
  
  
 0.605
Dred_2118
PFAM: type II secretion system protein; KEGG: nca:Noca_3118 type II secretion system protein.
  
  
 0.605
Dred_2115
PFAM: response regulator receiver; KEGG: rba:RB5175 probable pilus assembly protein CpaE.
  
  
 0.603
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.