STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_1202KEGG: ftn:FTN_0368 hypothetical protein. (183 aa)    
Predicted Functional Partners:
Dred_1203
PFAM: phage terminase GpA; KEGG: mgm:Mmc1_1322 phage terminase GpA.
 
    0.963
Dred_1204
TIGRFAM: phage portal protein, lambda family; PFAM: phage portal protein, lambda; KEGG: gox:GOX2339 bacteriophage capsid structural protein.
 
    0.904
Dred_1207
Hypothetical protein; KEGG: gox:GOX2343 putative capsid protein of prophage.
 
  
 0.878
Dred_1209
KEGG: dsy:DSY2179 hypothetical protein.
 
    0.847
Dred_1213
PFAM: phage major tail tube protein; KEGG: xom:XOO_1589 phage-related tail protein.
 
   
 0.847
Dred_1212
KEGG: dsy:DSY2177 hypothetical protein.
 
     0.842
Dred_1216
PFAM: phage late control D family protein; KEGG: plu:plu3427 hypothetical protein.
 
     0.823
Dred_1218
KEGG: stt:t1358 hypothetical protein.
 
     0.823
Dred_1220
PFAM: Baseplate J family protein; KEGG: dsy:DSY2174 hypothetical protein.
 
     0.823
Dred_1221
Hypothetical protein; KEGG: cvi:CV0420 probable phage tail protein.
 
     0.823
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.