STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dred_2540PFAM: peptidase M23B; KEGG: tde:TDE2753 LysM domain/M23/M37 peptidase domain protein. (304 aa)    
Predicted Functional Partners:
Dred_2539
PFAM: peptidase M50; KEGG: swo:Swol_1617 putative protease.
       0.848
Dred_2538
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dsy:DSY3169 hypothetical protein.
  
    0.662
Dred_1646
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: chy:CHY_1563 penicillin-binding protein, 1A family.
  
   
 0.640
Dred_2537
KEGG: dsy:DSY3168 hypothetical protein.
       0.631
Dred_2536
TIGRFAM: ribonuclease, Rne/Rng family; PFAM: deoxyribonuclease/rho motif-related TRAM; RNA binding S1 domain protein; KH, type 1, domain protein; KEGG: mta:Moth_0556 ribonuclease, Rne/Rng family.
  
  
 0.614
rodA
Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
   
 0.590
Dred_2100
Penicillin-binding protein, 1A family; KEGG: swo:Swol_0921 penicillin-binding protein; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase.
  
   
 0.584
Dred_1087
CheC, inhibitor of MCP methylation; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: chy:CHY_1020 flagellar motor switch protein.
   
   0.567
Dred_2380
CheC, inhibitor of MCP methylation; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: chy:CHY_1020 flagellar motor switch protein.
   
   0.567
Dred_1803
TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; KEGG: tel:tll0049 penicillin-binding protein.
  
   
 0.556
Your Current Organism:
Desulfotomaculum reducens
NCBI taxonomy Id: 349161
Other names: D. reducens MI-1, Desulfotomaculum reducens MI-1, Desulfotomaculum reducens str. MI-1, Desulfotomaculum reducens strain MI-1
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