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rplT protein (Acidiphilium cryptum) - STRING interaction network
"rplT" - 50S ribosomal protein L20 in Acidiphilium cryptum
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rplT50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (118 aa)    
Predicted Functional Partners:
rpmI
PFAM- ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family (67 aa)
   
 
  0.999
rplJ
50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors (174 aa)
   
 
  0.999
Acry_0174
OmpA/MotB domain protein; PFAM- surface antigen msp4 family protein; OmpA/MotB domain protein; Belongs to the ompA family (361 aa)
     
      0.999
Acry_0173
PFAM- OmpA/MotB domain protein; Belongs to the ompA family (364 aa)
     
      0.999
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (124 aa)
 
 
  0.998
rpmA
PFAM- ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family (89 aa)
   
 
  0.997
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20 (104 aa)
   
 
  0.997
rpsP
PFAM- ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family (114 aa)
   
 
  0.997
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (158 aa)
 
 
  0.997
rplQ
PFAM- ribosomal protein L17 (146 aa)
 
 
  0.996
Your Current Organism:
Acidiphilium cryptum
NCBI taxonomy Id: 349163
Other names: A. cryptum JF-5, Acidiphilium cryptum, Acidiphilium cryptum JF-5, Acidiphilium cryptum str. JF-5, Acidiphilium cryptum strain JF-5, Acidiphilum cryptum JF-5
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