node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LCK_00571 | rnj | LCK_00571 | LCK_01366 | Predicted hydrolase of the metallo-beta-lactamase superfamily; COG0595R. | Predicted hydrolase of the metallo-beta-lactamase superfamily; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | 0.912 |
LCK_00571 | rny | LCK_00571 | LCK_00409 | Predicted hydrolase of the metallo-beta-lactamase superfamily; COG0595R. | Predicted HD superfamily hydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.564 |
LCK_01500 | rny | LCK_01500 | LCK_00409 | Superfamily II DNA and RNA helicase; COG0513LKJ. | Predicted HD superfamily hydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.567 |
LCK_01500 | rpsO | LCK_01500 | LCK_01343 | Superfamily II DNA and RNA helicase; COG0513LKJ. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.452 |
cshA | rny | LCK_00366 | LCK_00409 | Putative ATP-dependent RNA helicase; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily. | Predicted HD superfamily hydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.567 |
cshA | rpsO | LCK_00366 | LCK_01343 | Putative ATP-dependent RNA helicase; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.452 |
cshB | rnr | LCK_01242 | LCK_00407 | Superfamily II DNA and RNA helicase; Probable DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures. | Exoribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.409 |
cshB | rny | LCK_01242 | LCK_00409 | Superfamily II DNA and RNA helicase; Probable DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures. | Predicted HD superfamily hydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.567 |
cshB | rpsO | LCK_01242 | LCK_01343 | Superfamily II DNA and RNA helicase; Probable DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.452 |
ftsA | rny | LCK_00531 | LCK_00409 | Cell division protein FtsA; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family. | Predicted HD superfamily hydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.548 |
rnj | LCK_00571 | LCK_01366 | LCK_00571 | Predicted hydrolase of the metallo-beta-lactamase superfamily; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | Predicted hydrolase of the metallo-beta-lactamase superfamily; COG0595R. | 0.912 |
rnj | rny | LCK_01366 | LCK_00409 | Predicted hydrolase of the metallo-beta-lactamase superfamily; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. | Predicted HD superfamily hydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.564 |
rnr | cshB | LCK_00407 | LCK_01242 | Exoribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | Superfamily II DNA and RNA helicase; Probable DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures. | 0.409 |
rnr | rny | LCK_00407 | LCK_00409 | Exoribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | Predicted HD superfamily hydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.717 |
rnr | rpsO | LCK_00407 | LCK_01343 | Exoribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.432 |
rnr | smpB | LCK_00407 | LCK_00408 | Exoribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] | 0.810 |
rny | LCK_00571 | LCK_00409 | LCK_00571 | Predicted HD superfamily hydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | Predicted hydrolase of the metallo-beta-lactamase superfamily; COG0595R. | 0.564 |
rny | LCK_01500 | LCK_00409 | LCK_01500 | Predicted HD superfamily hydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | Superfamily II DNA and RNA helicase; COG0513LKJ. | 0.567 |
rny | cshA | LCK_00409 | LCK_00366 | Predicted HD superfamily hydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | Putative ATP-dependent RNA helicase; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily. | 0.567 |
rny | cshB | LCK_00409 | LCK_01242 | Predicted HD superfamily hydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | Superfamily II DNA and RNA helicase; Probable DEAD-box RNA helicase. May work in conjunction with the cold shock proteins to ensure proper initiation of transcription at low and optimal temperatures. | 0.567 |