STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCK_01404Topoisomerase IA; COG0550L. (692 aa)    
Predicted Functional Partners:
recQ
ATP-dependent DNA helicase RecQ; COG0514L; TIGR01389.
  
 0.783
LCK_00647
Rad3-related DNA helicase; COG2176L.
 
 0.611
LCK_01350
Protein of unknown function.
  
     0.610
polA
DNA polymerase I - 3'-5' exonuclease or polymerase domains; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
 0.585
ssb
Single-stranded DNA binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
 
 0.554
LCK_01612
Glycosyltransferase.
  
     0.538
LCK_01698
Accessory secretory protein Asp3.
  
     0.537
crcB
Protein crcB-like protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
  
   
 0.525
LCK_01699
Accessory secretory protein Asp2.
  
     0.508
leuS
leucyl-tRNA synthetase; COG0495J; TIGR00396; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
 0.469
Your Current Organism:
Leuconostoc citreum
NCBI taxonomy Id: 349519
Other names: L. citreum KM20, Leuconostoc citreum KM20, Leuconostoc citreum str. KM20, Leuconostoc citreum strain KM20
Server load: low (24%) [HD]