Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LCK_00647 | LCK_01404 | LCK_00647 | LCK_01404 | Rad3-related DNA helicase; COG2176L. | Topoisomerase IA; COG0550L. | 0.611 |
LCK_00647 | LCK_01698 | LCK_00647 | LCK_01698 | Rad3-related DNA helicase; COG2176L. | Accessory secretory protein Asp3. | 0.443 |
LCK_00647 | polA | LCK_00647 | LCK_01127 | Rad3-related DNA helicase; COG2176L. | DNA polymerase I - 3'-5' exonuclease or polymerase domains; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.896 |
LCK_00647 | recQ | LCK_00647 | LCK_00069 | Rad3-related DNA helicase; COG2176L. | ATP-dependent DNA helicase RecQ; COG0514L; TIGR01389. | 0.529 |
LCK_00647 | ssb | LCK_00647 | LCK_00170 | Rad3-related DNA helicase; COG2176L. | Single-stranded DNA binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.534 |
LCK_01350 | LCK_01404 | LCK_01350 | LCK_01404 | Protein of unknown function. | Topoisomerase IA; COG0550L. | 0.610 |
LCK_01350 | LCK_01612 | LCK_01350 | LCK_01612 | Protein of unknown function. | Glycosyltransferase. | 0.755 |
LCK_01350 | LCK_01698 | LCK_01350 | LCK_01698 | Protein of unknown function. | Accessory secretory protein Asp3. | 0.745 |
LCK_01350 | LCK_01699 | LCK_01350 | LCK_01699 | Protein of unknown function. | Accessory secretory protein Asp2. | 0.710 |
LCK_01350 | crcB | LCK_01350 | LCK_01641 | Protein of unknown function. | Protein crcB-like protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family. | 0.582 |
LCK_01404 | LCK_00647 | LCK_01404 | LCK_00647 | Topoisomerase IA; COG0550L. | Rad3-related DNA helicase; COG2176L. | 0.611 |
LCK_01404 | LCK_01350 | LCK_01404 | LCK_01350 | Topoisomerase IA; COG0550L. | Protein of unknown function. | 0.610 |
LCK_01404 | LCK_01612 | LCK_01404 | LCK_01612 | Topoisomerase IA; COG0550L. | Glycosyltransferase. | 0.538 |
LCK_01404 | LCK_01698 | LCK_01404 | LCK_01698 | Topoisomerase IA; COG0550L. | Accessory secretory protein Asp3. | 0.537 |
LCK_01404 | LCK_01699 | LCK_01404 | LCK_01699 | Topoisomerase IA; COG0550L. | Accessory secretory protein Asp2. | 0.508 |
LCK_01404 | crcB | LCK_01404 | LCK_01641 | Topoisomerase IA; COG0550L. | Protein crcB-like protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family. | 0.525 |
LCK_01404 | leuS | LCK_01404 | LCK_00580 | Topoisomerase IA; COG0550L. | leucyl-tRNA synthetase; COG0495J; TIGR00396; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.469 |
LCK_01404 | polA | LCK_01404 | LCK_01127 | Topoisomerase IA; COG0550L. | DNA polymerase I - 3'-5' exonuclease or polymerase domains; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.585 |
LCK_01404 | recQ | LCK_01404 | LCK_00069 | Topoisomerase IA; COG0550L. | ATP-dependent DNA helicase RecQ; COG0514L; TIGR01389. | 0.783 |
LCK_01404 | ssb | LCK_01404 | LCK_00170 | Topoisomerase IA; COG0550L. | Single-stranded DNA binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. | 0.554 |
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