STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCH_00451Serine phosphatase RsbU, regulator of sigma subunit; COG2208. (560 aa)    
Predicted Functional Partners:
HCH_00450
Anti-anti-sigma regulatory factor; Antagonist of anti-sigma factor; COG1366.
 
 0.998
HCH_03147
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); COG1366.
 
 0.995
HCH_05187
Protein containing STAS (Sulphate Transporter and AntiSigma factor antagonist) domain.
 
 0.995
HCH_00809
Signal transduction histidine kinase; COG0642.
 
 
0.992
HCH_00794
FOG: PAS/PAC domain; COG2202.
 
 
0.991
HCH_05184
FOG: HPt domain; COG2198.
 
 0.978
HCH_03701
Signal transduction histidine kinase; COG0642.
 
 
 0.977
HCH_05456
Response regulator containing a CheY-like receiver domain and a GGDEF domain; COG3706.
 
 
 0.976
HCH_00861
Signal transduction histidine kinase; COG0642.
 
 
0.971
HCH_01804
Signal transduction histidine kinase; COG0642.
 
 
0.971
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.