STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCH_02761Serine phosphatase RsbU, regulator of sigma subunit; COG2208. (392 aa)    
Predicted Functional Partners:
HCH_02762
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor); COG1366.
 
 
 0.988
HCH_00809
Signal transduction histidine kinase; COG0642.
 
 
 0.943
HCH_00794
FOG: PAS/PAC domain; COG2202.
 
 
 0.928
HCH_05456
Response regulator containing a CheY-like receiver domain and a GGDEF domain; COG3706.
  
 
 0.925
HCH_01804
Signal transduction histidine kinase; COG0642.
 
 
 0.920
HCH_00968
Signal transduction histidine kinase; COG0642.
 
 
 0.911
HCH_03701
Signal transduction histidine kinase; COG0642.
 
 
 0.911
HCH_00861
Signal transduction histidine kinase; COG0642.
 
 
 0.910
flgK
Flagellar hook-associated protein; COG1256; Belongs to the flagella basal body rod proteins family.
  
    0.872
flgJ
Muramidase (flagellum-specific); COG1705.
   
    0.838
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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