STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCH_02765Selenocysteine lyase; COG0520. (386 aa)    
Predicted Functional Partners:
HCH_05715
Conserved hypothetical protein.
  
 
 0.980
sufC
FeS assembly ATPase SufC; TIGRFAMsMatches:TIGR01978.
 
  
 0.933
trxB1
Thioredoxin-disulfide reductase; TIGRFAMsMatches:TIGR01292.
 
 
 0.921
csdB
Selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
  
 
0.920
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
    
 0.916
sufD
FeS assembly protein SufD; TIGRFAMsMatches:TIGR01981.
 
 
 0.908
sufB
FeS assembly protein SufB; TIGRFAMsMatches:TIGR01980.
 
 
 0.901
HCH_01408
SufE protein probably involved in Fe-S center assembly; COG2166.
 
 
 0.851
HCH_01017
Metal-dependent hydrolase; COG3568.
  
 
   0.697
HCH_00146
Conserved hypothetical protein.
    
   0.602
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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