STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phnWSerine-pyruvate aminotransferase/archaeal aspartate aminotransferase; Involved in phosphonate degradation; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily. (369 aa)    
Predicted Functional Partners:
phnX
Phosphonoacetaldehyde hydrolase; Involved in phosphonate degradation; Belongs to the HAD-like hydrolase superfamily. PhnX family.
  
 0.999
HCH_03086
ABC-type Fe3+ transport system, permease component; COG1178.
 
     0.911
HCH_03082
Glycine/D-amino acid oxidases (deaminating); COG0665.
 
 
 0.875
HCH_03083
Permease of the drug/metabolite transporter (DMT) superfamily; COG0697.
       0.807
HCH_03088
ABC-type Fe3+ transport system, periplasmic component; COG1840.
 
  
 0.793
HCH_03087
ABC-type spermidine/putrescine transport system, ATPase components; COG3842; Belongs to the ABC transporter superfamily.
 
     0.743
HCH_03080
Predicted HD phosphohydrolase; COG4341.
 
     0.740
HCH_05547
ABC-type Fe3+ transport system, periplasmic component; COG1840.
 
  
 0.667
HCH_03081
Phosphoserine phosphatase; COG0560.
   
 
 0.652
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
  
 0.649
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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