STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCH_05427Conserved hypothetical protein. (270 aa)    
Predicted Functional Partners:
HCH_05429
Predicted exporters of the RND superfamily; COG1033.
   
 0.971
HCH_05426
Conserved hypothetical protein.
 
     0.943
HCH_02489
Predicted exporters of the RND superfamily; COG1033.
   
 0.800
HCH_05430
Rhodanese-related sulfurtransferase; COG0607.
       0.794
HCH_02350
ABC-type transport system, involved in lipoprotein release, permease component; COG4591.
 
 
 
 0.679
HCH_02491
Conserved hypothetical protein.
 
     0.632
HCH_00658
ABC-type antimicrobial peptide transport system, permease component; COG0577.
   
 
 0.591
HCH_05387
N-acetylmuramoyl-L-alanine amidase; COG0860.
    
   0.586
macB
ABC-type antimicrobial peptide transport system, permease component; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
   
 
 0.567
HCH_05431
Predicted transcriptional regulator; COG0640.
       0.564
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.