STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HCH_05591Glycosyltransferase, probably involved in cell wall biogenesis; COG1215. (414 aa)    
Predicted Functional Partners:
HCH_05590
Predicted xylanase/chitin deacetylase; COG0726.
 
  
 0.980
HCH_05589
FOG: TPR repeat; COG0457.
     
 0.817
HCH_05592
Hypothetical protein.
       0.773
HCH_04711
FOG: TPR repeat; COG0457.
 
 
 0.666
HCH_02169
Predicted xylanase/chitin deacetylase; COG0726.
  
  
 0.651
HCH_02719
Predicted xylanase/chitin deacetylase; COG0726.
  
  
 0.608
HCH_02739
Predicted xylanase/chitin deacetylase; COG0726.
  
  
 0.608
HCH_02730
Conserved hypothetical protein.
  
 
 0.599
HCH_04784
Uncharacterized protein containing a von Willebrand factor type A (vWA) domain; COG2304.
  
 
 0.599
HCH_05102
Protein containing tetratricopeptide repeats.
  
 
 0.599
Your Current Organism:
Hahella chejuensis
NCBI taxonomy Id: 349521
Other names: H. chejuensis KCTC 2396, Hahella chejuensis KCTC 2396, Hahella chejuensis str. KCTC 2396, Hahella chejuensis strain KCTC 2396
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.