STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_0616PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: rsq:Rsph17025_3425 hypothetical protein. (259 aa)    
Predicted Functional Partners:
Amuc_1421
PFAM: Serine/threonine protein kinase-related; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: mgm:Mmc1_1921 serine/threonine protein kinase.
 
 
 0.860
Amuc_0080
PFAM: Serine/threonine protein kinase-related; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: mgm:Mmc1_1921 serine/threonine protein kinase.
 
 
 0.843
Amuc_1994
PFAM: Serine/threonine protein kinase-related; SMART: serine/threonine protein kinase; KEGG: sil:SPO1059 serine/threonine protein kinase.
 
 
 0.843
Amuc_0589
PFAM: protein of unknown function RIO1; Serine/threonine protein kinase-related; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rxy:Rxyl_0943 serine/threonine protein kinase.
 
 
 0.842
Amuc_0078
Serine/threonine protein kinase; PFAM: protein of unknown function DUF323; PEGA domain protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: ilo:IL2186 secreted protein with uncharacterized domain.
 
 
 0.841
Amuc_1159
PFAM: Serine/threonine protein kinase-related; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: rba:RB6033 serine/threonine protein kinase.
 
 
 0.841
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
   0.674
gcvT
Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine.
   
  0.654
Amuc_0196
SMART: serine/threonine protein kinase; KEGG: rba:RB8028 serine/threonine kinase Pkn10.
 
 
 0.596
Amuc_0617
Hypothetical protein.
       0.536
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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