STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_1516Putative PAS/PAC sensor protein; KEGG: pth:PTH_2274 serine phosphatase RsbU; TIGRFAM: PAS sensor protein; PFAM: Stage II sporulation E family protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAS domain containing protein; protein phosphatase 2C domain protein. (545 aa)    
Predicted Functional Partners:
Amuc_1117
PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; KEGG: sfu:Sfum_1822 thiazole biosynthesis protein ThiH.
  
 
 0.905
Amuc_1122
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pol:Bpro_2082 anti-sigma-factor antagonist (STAS) domain protein.
  
 
 0.902
Amuc_1517
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: rba:RB8553 probable ECF sigma factor.
 
  
 0.617
Amuc_1109
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: mta:Moth_2494 multi-sensor signal transduction histidine kinase.
 
 
 0.603
Amuc_0858
PFAM: cyclic nucleotide-binding; ATP-binding region ATPase domain protein; KEGG: vfi:VF1053 sensory transduction protein kinase.
 
 
 
 0.588
Amuc_1727
PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: hch:HCH_00947 signal transduction histidine kinase.
  
 
 0.560
Amuc_0828
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: hau:Haur_2274 two component transcriptional regulator, winged helix family.
  
 
 0.534
Amuc_1110
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sfu:Sfum_0707 two component transcriptional regulator, winged helix family.
 
 
 0.534
Amuc_1728
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: dsy:DSY4623 hypothetical protein.
  
 
 0.534
Amuc_0857
PFAM: response regulator receiver; KEGG: ppr:PBPRA1218 putative chemotaxis protein CheY.
 
 
 0.528
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.