STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amuc_1928PFAM: periplasmic binding protein; KEGG: bcy:Bcer98_0362 periplasmic binding protein. (307 aa)    
Predicted Functional Partners:
Amuc_1929
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpy:Cphy_0733 ABC transporter related.
 
  
 0.983
Amuc_1931
PFAM: transport system permease protein; KEGG: bcl:ABC2895 enterochelin ABC transporter permease; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.983
Amuc_1930
PFAM: transport system permease protein; KEGG: bld:BLi00464 YclO; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.982
Amuc_1926
PFAM: cytochrome c assembly protein; KEGG: afw:Anae109_1713 cytochrome c assembly protein.
       0.639
Amuc_1927
Hypothetical protein; KEGG: afw:Anae109_2747 cytochrome c assembly protein.
       0.639
Amuc_1932
PFAM: Endoribonuclease L-PSP; KEGG: acr:Acry_3477 endoribonuclease L-PSP.
       0.639
Amuc_1933
PFAM: protein of unknown function DUF1111; KEGG: bvu:BVU_2770 hypothetical protein.
       0.614
Your Current Organism:
Akkermansia muciniphila
NCBI taxonomy Id: 349741
Other names: A. muciniphila ATCC BAA-835, Akkermansia muciniphila ATCC BAA-835, Akkermansia muciniphila Muc, Akkermansia muciniphila str. ATCC BAA-835, Akkermansia muciniphila strain ATCC BAA-835, Akkermansia sp. Muc
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